Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs7804532 | chr7:7571094 | G/C | 1.11E-16 | 406 | 2.23 | 15.33 | 15.35 | KM Plot |
| LGG | rs7809835 | chr7:99587515 | T/C | 0 | 406 | 1.23 | 19.03 | 15.03 | KM Plot |
| LGG | rs78135354 | chr2:17955252 | G/A | 1.48E-8 | 404 | 15.2 | 16.22 | 7.33 | KM Plot |
| LGG | rs781355 | chr14:52876946 | C/T | 0.00011 | 407 | 15.9 | 9.5 | 6.13 | KM Plot |
| LGG | rs78147922 | chr2:17895217 | A/G | 1.44E-8 | 406 | 15.3 | 15.67 | 7.33 | KM Plot |
| LGG | rs78155116 | chr8:1730694 | A/C | 1.45E-6 | 398 | 15.35 | 15.43 | 5.42 | KM Plot |
| LGG | rs78175144 | chr7:56033891 | C/T | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs78181796 | chr16:4948494 | C/T | 2.5E-6 | 402 | 15.17 | 15.97 | 7.8 | KM Plot |
| LGG | rs78241018 | chr21:43230111 | T/C | 4.1E-6 | 401 | 15.37 | 15.97 | 8 | KM Plot |
| LGG | rs78296099 | chr7:55969146 | A/G | 1.54E-10 | 406 | 15.25 | 15.93 | 7.8 | KM Plot |
| LGG | rs78351804 | chr9:94621645 | C/T | 6.99E-5 | 407 | 15.18 | 16.47 | 17.55 | KM Plot |
| LGG | rs78395014 | chr9:94144212 | T/A | 1.35E-5 | 402 | 15.03 | 19.2 | 8 | KM Plot |
| LGG | rs78416182 | chr19:23539546 | T/A | 2.97E-6 | 407 | 15.25 | 15.67 | 7.8 | KM Plot |
| LGG | rs78424510 | chr3:153689100 | G/A | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
| LGG | rs7848226 | chr9:93920117 | C/G | 4.88E-5 | 399 | 14.1 | 18.58 | 19.2 | KM Plot |